If you are migrating from the HoloToolkit to Mixed Reality Toolkit 2 'cold turkey,' as I am doing for my AMS HoloATC app, a lot of things break, as I already said in the first post of this series. For things that you can tap, you can simply change the implementing interface from IInputClickHandler or IManipulationHandler to a couple of other interface and change the signature a bit — that's not complex, only tedious, depending on how much you have used it.
What I found really hard was the removal of the Singleton class and the 3DTextFab. I used both quite extensively. The first one I needed for like data access classes as the concept of services that was introduced in the Mixed Reality Toolkit 2 was not yet available, and the other... well basically all my texts were 3DTextPrefabs so any kind of user feedback in text format was gone. Because so much breaks at the same time, it's very hard to step by step rebuilding your app to a working condition. Basically you have to change everything before something starts to work again. Since I was still learning by doing, there was no way to test if I was doing things more or less right. I got stuck and took a radical approach.